Based on the nearest community profile, what is the expected distribution of citations
from journal idx?
fitted_citations(idx = NULL, citations, communities, self = TRUE)
| idx | A journal name or index. Vectorised for |
|---|---|
| citations | a matrix of citations (from columns to rows) or an igraph object |
| communities | A membership vector or igraph::communities object |
| self | logical. Include self-citations? If |
A vector of predicted outgoing citations from journal idx.
To vectorise this function, it might be easier first to create a vectorised version of
nearest_point().
Other functions for residual analysis of communities: community_residuals,
profile_residuals
distances <- as.dist(1 - cor(citations + t(citations) - diag(diag(citations)))) clusters <- cutree(hclust(distances), h = 0.6) fitted_citations(NULL, citations, clusters)#> AmS AISM AoS ANZS Bern BioJ #> AmS 3.232653e+01 1.03542057 3.799478e+00 0.6683883 0.94632077 3.4291315 #> AISM 8.592441e-18 3.40603950 8.909121e+00 1.4739298 2.21895905 0.4339986 #> AoS 6.061224e+00 18.85853746 1.363882e+02 8.5420320 33.96965247 10.7964948 #> ANZS 0.000000e+00 1.31257309 4.061511e+00 0.5558448 1.01158427 0.2599191 #> Bern 6.734694e-01 3.53661724 1.821129e+01 1.4871840 4.53581335 0.5019628 #> BioJ 0.000000e+00 0.99797282 3.668461e+00 1.0797329 0.91368902 14.6942697 #> Bcs 7.408163e+00 5.31774873 3.249209e+01 5.9586897 8.09267417 57.5239721 #> Bka 8.081633e+00 10.15989142 6.367401e+01 5.5014719 15.85903084 20.4925493 #> Biost 2.693878e+00 1.31883771 9.302170e+00 1.6415190 2.31685430 25.1295619 #> CJS 8.352776e-18 2.36547303 1.349470e+01 1.2004569 3.36107032 2.2332196 #> CSSC 1.346939e+00 1.47187286 1.965247e+00 0.6867017 0.48947626 2.0126201 #> CSTM 2.020408e+00 6.53741549 6.419807e+00 2.9437970 1.59895578 1.9374869 #> CmpSt 4.282109e-18 0.54194366 3.930494e+00 0.2976723 0.97895252 0.2599191 #> CSDA 6.734694e+00 5.63349563 2.908566e+01 3.8912889 7.24424865 12.9114729 #> EES 3.637356e-17 0.28361289 1.965247e+00 1.9009594 0.48947626 1.0063257 #> Envr 2.580313e-17 0.92668506 5.895742e+00 1.7622279 1.46842878 1.7992210 #> ISR 1.548980e+01 0.68717605 2.227280e+00 0.3950045 0.55473976 1.0730899 #> JABES 2.158049e-17 0.34729365 1.834231e+00 1.1404541 0.45684451 1.4653687 #> JASA 1.279592e+01 17.43630588 1.172597e+02 10.3707572 29.20541687 39.5745561 #> JAS 9.710159e-18 1.18350559 1.310165e+00 0.5386842 0.32631751 1.3592221 #> JBS 0.000000e+00 0.16385839 1.310165e-01 0.6785194 0.03263175 14.8469050 #> Bcs Bka Biost CJS CSSC CSTM #> AmS 5.7013563 2.5671240 2.5776905 2.2402905 5.6834919 5.0091171 #> AISM 2.6441716 4.8826707 1.4162382 1.5570666 5.9322785 17.9271661 #> AoS 45.5715266 75.5298936 24.0784698 23.3616168 21.4378944 44.0735425 #> ANZS 1.1135462 2.2281576 0.6487089 0.7653450 2.9541483 6.6390153 #> Bern 4.5835035 9.9405388 2.6216056 2.9518926 4.5401604 12.8670619 #> BioJ 19.4665782 4.2178427 8.6262390 2.4941223 5.7972825 5.0154635 #> Bcs 88.9218998 26.3961696 38.5129433 14.5375722 18.6239920 16.9840302 #> Bka 42.6816067 37.6112160 20.3014148 13.4938276 17.1179380 30.3067015 #> Biost 33.9352044 8.8938880 15.2190195 4.5836477 5.8180038 3.4026021 #> CJS 6.5601921 7.6356078 3.1858907 2.7283208 4.5822836 8.0460176 #> CSSC 2.5030521 1.3190916 1.1658310 0.8234509 7.2803285 9.7104928 #> CSTM 4.1543758 3.6971263 1.8619380 1.8656490 17.6521067 42.0079776 #> CmpSt 1.5672934 2.1570983 0.7480236 0.8438914 1.6029078 1.4395458 #> CSDA 27.1953198 17.3070333 11.7039001 10.5880274 45.5443821 27.1224473 #> EES 14.2356558 1.2178106 4.0708235 3.4036465 0.5480552 0.7385299 #> Envr 12.9028177 3.4635298 4.1942443 3.4170279 1.8490730 2.7694870 #> ISR 2.2189402 1.3599291 0.9712633 1.0731311 3.1239467 3.4995138 #> JABES 8.9263070 1.2100520 2.7724325 2.0943597 1.3468075 1.3716450 #> JASA 85.7376893 69.5103259 39.6078954 26.3800370 32.3246869 47.6274223 #> JAS 1.5310937 0.8625143 0.7445401 0.6654700 6.8390438 8.1619688 #> JBS 18.6063068 2.3498830 8.2209626 1.7300467 2.6828485 1.1304284 #> CmpSt CSDA EES Envr ISR JABES #> AmS 1.0374619 15.809796 9.309663e-01 1.23451995 11.84255250 0.856865441 #> AISM 0.9757741 11.993639 3.096422e-01 1.44301296 0.54370714 0.250820343 #> AoS 8.9036395 77.413486 3.102541e+00 7.58996767 3.55451726 2.903492452 #> ANZS 0.7538343 10.903308 2.867143e-18 0.42653418 0.20309654 0.011700137 #> Bern 1.1900270 10.358142 0.000000e+00 1.00286725 0.63409777 0.035248611 #> BioJ 1.5156338 24.532443 6.192844e-01 0.91930742 0.15782808 1.219943101 #> Bcs 4.3912251 58.332697 1.300701e+01 14.14566305 3.20982037 12.557701126 #> Bka 5.3584424 57.242366 4.337030e+00 6.89912622 3.85456393 4.277298332 #> Biost 1.0828290 13.629135 6.192844e-01 0.93009773 1.07979892 1.779440603 #> CJS 1.5919474 20.171120 1.240609e+00 1.85769555 0.25282578 1.025843104 #> CSSC 2.4516932 41.977735 4.024729e-18 0.53045280 0.79085202 0.088229179 #> CSTM 3.7146275 61.603690 1.238569e+00 3.61594136 2.01324156 0.985869856 #> CmpSt 0.7495111 10.903308 6.192844e-01 0.73741514 0.04634241 0.465272348 #> CSDA 20.1768047 338.002545 1.052987e+01 11.90977373 3.34757349 8.258973374 #> EES 0.1888110 2.180662 1.610139e+01 15.84437579 0.02285384 11.848936064 #> Envr 0.6594052 8.177481 1.207605e+01 12.07072951 0.08570190 8.942053493 #> ISR 0.6377283 9.812977 6.233640e-01 0.82796868 5.71561674 0.507387514 #> JABES 0.4943954 7.632316 8.669981e+00 8.59131400 0.04341247 6.426493142 #> JASA 11.3743118 131.930025 1.455318e+01 18.64834183 6.09579197 12.774521332 #> JAS 2.4605114 42.522901 0.000000e+00 0.43196678 0.25754491 0.053035040 #> JBS 0.2522493 4.361323 0.000000e+00 0.06082128 0.03525740 0.780993207 #> JASA JAS JBS JCGS JMA JNS #> AmS 5.1155269 5.0158891 3.01519757 2.0561187 6.4578574 1.89399152 #> AISM 9.6980689 4.0441524 0.30151976 2.7595843 20.5358353 5.83768432 #> AoS 148.7077729 17.8705733 9.27173252 37.9854035 130.8615852 34.34909205 #> ANZS 4.3595228 2.2671648 0.15075988 1.5095483 8.0376408 2.29614233 #> Bern 19.4837625 3.1829288 0.37689970 5.0129317 23.0891904 6.28004167 #> BioJ 7.0204510 6.5890465 13.26686930 1.9728776 6.2255590 1.75575460 #> Bcs 51.6994821 21.5422693 52.23829787 13.9748235 35.7244703 9.68302592 #> Bka 73.7284600 15.6492428 18.31732523 19.3236483 68.5683631 18.31856778 #> Biost 15.0803365 7.4373548 22.91550152 3.2058061 9.1050764 2.46413307 #> CJS 15.3457577 3.9719534 1.88449848 4.5487331 15.7022357 4.26332265 #> CSSC 2.4153598 6.6872732 1.50759878 1.8724537 8.5028159 2.47389187 #> CSTM 7.6791607 13.5973843 1.28145897 3.9545526 37.3107105 10.93466061 #> CmpSt 4.5028634 1.5155419 0.15075988 1.5916638 3.7627910 1.00936947 #> CSDA 37.7443466 45.7351781 9.12097264 22.3480989 36.7940260 10.32118778 #> EES 9.6430421 0.5648001 0.90455927 4.6752258 1.9510947 0.51330440 #> Envr 12.1364186 1.7150765 1.58297872 4.9207050 6.2714790 1.68953238 #> ISR 2.8488915 2.7317430 0.90455927 1.0839571 4.2278697 1.19745424 #> JABES 6.1886150 1.3747544 1.28145897 2.9248128 2.2763896 0.61535189 #> JASA 139.0907494 30.8929135 35.20243161 38.1369347 119.2497482 31.63444939 #> JAS 1.5888086 6.3308487 0.90455927 1.8540571 6.7837305 2.01969122 #> JBS 3.0328063 3.7551397 13.56838906 0.2619265 0.9292900 0.29785946 #> JRSS-A JRSS-B JRSS-C JSCS JSPI JSS #> AmS 2.75372899 1.22548540 2.53127382 2.9368398 9.9372897 8.000000e+00 #> AISM 0.26917814 2.87355197 0.68044117 5.4495768 36.2437757 1.000000e+00 #> AoS 3.57666869 43.99069995 11.77456935 17.6442100 104.6348597 7.000000e+00 #> ANZS 0.13984263 1.31000163 0.27465324 2.5393815 13.2546424 3.000000e+00 #> Bern 0.28672822 5.87387828 1.14698803 4.0637653 27.6786582 2.000000e+00 #> BioJ 3.62305507 1.18322728 5.04774605 3.6717866 9.5292722 2.000000e+00 #> Bcs 14.78795630 10.48001305 24.10021277 10.7730024 37.9273271 1.300000e+01 #> Bka 5.79818361 20.53744493 11.40791235 12.8760988 67.6112341 7.000000e+00 #> Biost 6.38451039 3.00032632 8.83539999 2.7411446 7.6388443 6.000000e+00 #> CJS 0.71623879 4.35258607 1.75270183 3.7104466 17.2466185 4.000000e+00 #> CSSC 0.56374674 0.63387176 0.67958906 5.8642664 17.7257025 0.000000e+00 #> CSTM 0.85749568 2.07064774 1.21676544 15.5030680 81.4688433 1.960602e-17 #> CmpSt 0.07610495 1.26774351 0.44400518 1.2416515 3.0745021 2.000000e+00 #> CSDA 3.43227693 9.38130201 8.00646679 34.3498957 45.5890176 2.900000e+01 #> EES 0.24927400 0.63387176 5.01468306 0.3902013 4.0848169 0.000000e+00 #> Envr 0.47367437 1.90161527 4.32072550 1.4024251 7.8274606 2.000000e+00 #> ISR 1.28563086 0.71838799 1.09452306 1.8676602 6.9208575 1.000000e+00 #> JABES 0.35544664 0.59161364 3.02224449 0.9995365 3.9721300 0.000000e+00 #> JASA 10.71274753 37.82101485 23.33402414 23.8037721 108.2788553 1.300000e+01 #> JAS 0.35045656 0.42258117 0.38996019 5.4889736 14.5514597 3.000000e+00 #> JBS 3.66921082 0.04225812 4.78442598 1.0892811 2.0703690 2.000000e+00 #> JTSA LDA Mtka SJS StataJ StCmp #> AmS 3.17189504 1.3086975 1.27358491 2.2245490 1 1.4959314 #> AISM 2.09063069 1.0552454 4.81132075 2.1608568 0 2.5537928 #> AoS 9.99474527 14.3377709 11.55660377 25.1192452 3 36.4306108 #> ANZS 0.80147715 0.4451083 1.74528302 0.9423269 0 1.2525617 #> Bern 2.00644328 1.7118094 3.44339623 3.3653998 0 4.7754506 #> BioJ 0.62346235 4.0529210 1.22641509 3.0244841 0 1.5965010 #> Bcs 3.47142425 18.7850703 4.29245283 16.7851192 1 12.2251169 #> Bka 6.02373931 11.0156741 7.92452830 15.0411846 1 18.1005933 #> Biost 0.89717793 7.1177140 0.84905660 5.2668619 0 2.7747520 #> CJS 1.29803318 1.8504471 2.07547170 3.0297477 1 4.0782691 #> CSSC 1.11753744 0.6790665 2.40566038 1.1700418 0 1.4080920 #> CSTM 4.49253370 1.5385948 11.08490566 3.3188790 0 3.2143340 #> CmpSt 0.28818563 0.4522379 0.33018868 0.8830913 0 1.3526077 #> CSDA 4.19214093 6.4674303 5.47169811 11.4951461 1 16.9049774 #> EES 0.14693998 2.5676459 0.18867925 3.9822409 0 3.9914268 #> Envr 0.49445822 2.5508301 0.70754717 3.9194635 0 4.2416750 #> ISR 1.64203305 0.5485280 0.89622642 1.1379863 2 0.9040529 #> JABES 0.20211132 1.6717541 0.33018868 2.4593805 0 2.4846971 #> JASA 10.12102706 21.4571041 12.21698113 29.2115399 0 35.3217936 #> JAS 0.83496084 0.4427023 1.98113208 0.9014051 0 1.2557955 #> JBS 0.11417935 3.7271139 0.28301887 2.1241475 0 0.1403010 #> Stats StMed SMMR StMod StNee StPap #> AmS 1.3565621 13.5602837 2.01013171 1.4200066 0.5388469 1.4151047 #> AISM 3.9390064 1.3560284 0.20101317 0.5176853 1.1053149 5.2981575 #> AoS 9.8911768 41.6978723 6.18115502 5.3964127 6.4637296 12.7746343 #> ANZS 1.4770719 0.6780142 0.10050659 0.4624247 0.4275818 1.9284418 #> Bern 2.8365243 1.6950355 0.25126646 0.6455187 1.1330897 3.7935953 #> BioJ 1.1620821 59.6652482 8.84457953 2.3825850 1.2259041 1.3720136 #> Bcs 3.9237638 234.9319149 34.82553191 8.9073907 5.2421391 4.7744813 #> Bka 6.8270565 82.3787234 12.21155015 4.9690384 4.4160504 8.7639134 #> Biost 0.7973300 103.0581560 15.27700101 3.4780318 1.9805152 0.9464964 #> CJS 1.8204732 8.4751773 1.25633232 1.0934740 0.8705024 2.3004964 #> CSSC 2.2430110 6.7801418 1.00506586 1.3610872 0.5760541 2.6851059 #> CSTM 9.3382566 5.7631206 0.85430598 1.9441145 2.1921370 12.2405543 #> CmpSt 0.3444974 0.6780142 0.10050659 0.4346994 0.1779616 0.3736922 #> CSDA 6.9211004 41.0198582 6.08064843 11.7153109 2.3980174 6.3501352 #> EES 0.1670559 4.0680851 0.60303951 0.3232774 0.1497181 0.2094834 #> Envr 0.6264598 7.1191489 1.05531915 0.6515801 0.3966356 0.7855628 #> ISR 0.9119931 4.0680851 0.60303951 0.5955641 0.2858643 0.9945003 #> JABES 0.3204284 5.7631206 0.85430598 0.4557612 0.1964817 0.3704170 #> JASA 10.8317906 158.3163121 23.46828774 10.0822606 7.8153286 13.5547707 #> JAS 1.8985013 4.0680851 0.60303951 1.3732929 0.4433650 2.2192269 #> JBS 0.2586069 61.0212766 9.04559271 1.8180922 0.9839280 0.3153168 #> SPL StSci StSin Tech Test #> AmS 5.0711835 12.8460975 2.89101 3.2116104 1.79496822 #> AISM 19.1578045 1.5744700 6.77892 2.4299563 4.44499302 #> AoS 46.0162950 27.8331248 103.77729 16.0592363 39.03898595 #> ANZS 6.9493997 0.7943931 3.09039 1.1087668 1.82965710 #> Bern 13.7109777 3.1403046 13.85691 2.6758461 5.98560526 #> BioJ 4.8833619 8.1091981 2.79132 1.9800575 1.70362341 #> Bcs 17.0917667 39.6284648 24.72312 8.9193380 12.88943459 #> Bka 31.5540309 23.2293853 48.44934 9.9844625 20.11536813 #> Biost 3.3807890 15.2706075 7.07799 2.7988412 2.83875825 #> CJS 8.2641509 3.4632958 10.26807 2.2400614 4.56114042 #> CSSC 9.5789022 1.5394467 1.49535 1.9493837 1.78057643 #> CSTM 44.1380789 2.5705773 4.88481 5.4579571 7.14318481 #> CmpSt 1.3147513 0.8850132 2.99070 0.6641387 1.28937810 #> CSDA 21.7873070 15.1011296 22.13118 12.5332209 13.59584262 #> EES 0.7512864 4.6936588 1.49535 0.7745454 4.04499581 #> Envr 2.8173242 4.7435528 4.48605 1.2868182 4.39081326 #> ISR 3.5686106 5.8422640 1.69473 1.6628058 1.12791428 #> JABES 1.3147513 3.0797056 1.39566 0.7270736 2.50167562 #> JASA 48.6457976 44.5408679 89.22255 18.3451964 37.52867163 #> JAS 7.8885077 0.8128572 0.99690 1.7015735 1.44334927 #> JBS 1.1269297 7.6129668 0.09969 1.0048989 0.18833882 #> [ reached getOption("max.print") -- omitted 26 rows ]fitted_citations('Bka', citations, clusters)#> Bka #> AmS 2.5671240 #> AISM 4.8826707 #> AoS 75.5298936 #> ANZS 2.2281576 #> Bern 9.9405388 #> BioJ 4.2178427 #> Bcs 26.3961696 #> Bka 37.6112160 #> Biost 8.8938880 #> CJS 7.6356078 #> CSSC 1.3190916 #> CSTM 3.6971263 #> CmpSt 2.1570983 #> CSDA 17.3070333 #> EES 1.2178106 #> Envr 3.4635298 #> ISR 1.3599291 #> JABES 1.2100520 #> JASA 69.5103259 #> JAS 0.8625143 #> JBS 2.3498830 #> JCGS 12.3471700 #> JMA 24.0396829 #> JNS 5.5348643 #> JRSS-A 3.0494408 #> JRSS-B 41.0375780 #> JRSS-C 3.8756000 #> JSCS 2.6516561 #> JSPI 18.0466160 #> JSS 2.0599061 #> JTSA 1.7891418 #> LDA 2.7562133 #> Mtka 2.2281576 #> SJS 10.8112308 #> StataJ 0.3291634 #> StCmp 6.2952848 #> Stats 2.2154974 #> StMed 22.2878625 #> SMMR 2.2200054 #> StMod 1.8263096 #> StNee 1.5604468 #> StPap 0.5100750 #> SPL 11.6831290 #> StSci 9.0796755 #> StSin 16.3256763 #> Tech 4.5624977 #> Test 4.5196158